| AddCompartment(CompartmentType &cmpt) | biogears::SECompartmentGraph< COMPARTMENT_GRAPH_TYPES > | virtual |
| AddLink(CompartmentLinkType &link) | biogears::SECompartmentGraph< COMPARTMENT_GRAPH_TYPES > | virtual |
| BalanceByIntensive() override=0 | biogears::SECompartmentTransportGraph< COMPARTMENT_TRANSPORT_GRAPH_TEMPLATE > | protectedpure virtual |
| Clear() override | biogears::SECompartmentTransportGraph< COMPARTMENT_TRANSPORT_GRAPH_TEMPLATE > | virtual |
| Debug(const char *msg, const char *origin="") const | biogears::Loggable | protectedvirtual |
| Debug(const std::string &msg, const std::string &origin=empty) const | biogears::Loggable | protectedvirtual |
| Debug(std::ostream &msg, const std::string &origin=empty) const | biogears::Loggable | protectedvirtual |
| empty | biogears::Loggable | static |
| empty_cStr | biogears::Loggable | static |
| Error(const char *msg, const char *origin="") const | biogears::Loggable | protectedvirtual |
| Error(const std::string msg, const std::string origin=empty) const | biogears::Loggable | protectedvirtual |
| Error(std::ostream &msg, const std::string &origin=empty) const | biogears::Loggable | protectedvirtual |
| Fatal(const char *msg, const char *origin="") const | biogears::Loggable | protectedvirtual |
| Fatal(const std::string &msg, const std::string &origin=empty) const | biogears::Loggable | protectedvirtual |
| Fatal(std::ostream &msg, const std::string &origin=empty) const | biogears::Loggable | protectedvirtual |
| GetCompartment(const char *name) | biogears::SECompartmentGraph< COMPARTMENT_GRAPH_TYPES > | virtual |
| GetCompartment(const std::string &name) | biogears::SECompartmentGraph< COMPARTMENT_GRAPH_TYPES > | virtual |
| GetCompartment(const char *name) const | biogears::SECompartmentGraph< COMPARTMENT_GRAPH_TYPES > | virtual |
| GetCompartment(const std::string &name) const | biogears::SECompartmentGraph< COMPARTMENT_GRAPH_TYPES > | virtual |
| GetCompartments() const | biogears::SECompartmentGraph< COMPARTMENT_GRAPH_TYPES > | virtual |
| GetLink(const char *name) | biogears::SECompartmentGraph< COMPARTMENT_GRAPH_TYPES > | virtual |
| GetLink(const std::string &name) | biogears::SECompartmentGraph< COMPARTMENT_GRAPH_TYPES > | virtual |
| GetLink(const char *name) const | biogears::SECompartmentGraph< COMPARTMENT_GRAPH_TYPES > | virtual |
| GetLink(const std::string &name) const | biogears::SECompartmentGraph< COMPARTMENT_GRAPH_TYPES > | virtual |
| GetLinks() const | biogears::SECompartmentGraph< COMPARTMENT_GRAPH_TYPES > | virtual |
| GetLogger() const | biogears::Loggable | virtual |
| GetName() const override | biogears::SECompartmentTransportGraph< COMPARTMENT_TRANSPORT_GRAPH_TEMPLATE > | virtual |
| GetName_cStr() const override | biogears::SECompartmentTransportGraph< COMPARTMENT_TRANSPORT_GRAPH_TEMPLATE > | virtual |
| GetSourceEdges(const GraphVertexType &v) const override | biogears::SECompartmentTransportGraph< COMPARTMENT_TRANSPORT_GRAPH_TEMPLATE > | protectedvirtual |
| GetTargetEdges(const GraphVertexType &v) const override | biogears::SECompartmentTransportGraph< COMPARTMENT_TRANSPORT_GRAPH_TEMPLATE > | protectedvirtual |
| GetVertexIndex(const GraphVertexType &v) const override | biogears::SECompartmentTransportGraph< COMPARTMENT_TRANSPORT_GRAPH_TEMPLATE > | protectedvirtual |
| GetVerticies() const override | biogears::SECompartmentTransportGraph< COMPARTMENT_TRANSPORT_GRAPH_TEMPLATE > | protectedvirtual |
| Info(const char *msg, const char *origin="") const | biogears::Loggable | protectedvirtual |
| Info(const std::string &msg, const std::string &origin=empty) const | biogears::Loggable | protectedvirtual |
| Info(std::ostream &msg, const std::string &origin=empty) const | biogears::Loggable | protectedvirtual |
| Loggable() | biogears::Loggable | |
| Loggable(Logger *log) | biogears::Loggable | |
| m_CompartmentLinks | biogears::SECompartmentGraph< COMPARTMENT_GRAPH_TYPES > | protected |
| m_Compartments | biogears::SECompartmentGraph< COMPARTMENT_GRAPH_TYPES > | protected |
| m_Logger | biogears::Loggable | protected |
| m_Name | biogears::SECompartmentGraph< COMPARTMENT_GRAPH_TYPES > | protected |
| m_SourceEdgeMap | biogears::SECompartmentTransportGraph< COMPARTMENT_TRANSPORT_GRAPH_TEMPLATE > | protected |
| m_TargetEdgeMap | biogears::SECompartmentTransportGraph< COMPARTMENT_TRANSPORT_GRAPH_TEMPLATE > | protected |
| m_VertexIndicies | biogears::SECompartmentTransportGraph< COMPARTMENT_TRANSPORT_GRAPH_TEMPLATE > | protected |
| m_Verticies | biogears::SECompartmentTransportGraph< COMPARTMENT_TRANSPORT_GRAPH_TEMPLATE > | protected |
| RemoveCompartment(const CompartmentType &cmpt) | biogears::SECompartmentGraph< COMPARTMENT_GRAPH_TYPES > | virtual |
| RemoveCompartment(const char *name) | biogears::SECompartmentGraph< COMPARTMENT_GRAPH_TYPES > | virtual |
| RemoveCompartment(const std::string &name) | biogears::SECompartmentGraph< COMPARTMENT_GRAPH_TYPES > | virtual |
| RemoveLink(const CompartmentLinkType &link) | biogears::SECompartmentGraph< COMPARTMENT_GRAPH_TYPES > | virtual |
| RemoveLink(const char *name) | biogears::SECompartmentGraph< COMPARTMENT_GRAPH_TYPES > | virtual |
| RemoveLink(const std::string &name) | biogears::SECompartmentGraph< COMPARTMENT_GRAPH_TYPES > | virtual |
| SECompartmentGraph(const std::string &name, Logger *logger) | biogears::SECompartmentGraph< COMPARTMENT_GRAPH_TYPES > | protected |
| SECompartmentGraph(const char *name, Logger *logger) | biogears::SECompartmentGraph< COMPARTMENT_GRAPH_TYPES > | protected |
| SECompartmentTransportGraph(const char *name, Logger *logger) | biogears::SECompartmentTransportGraph< COMPARTMENT_TRANSPORT_GRAPH_TEMPLATE > | |
| SECompartmentTransportGraph(const std::string &name, Logger *logger) | biogears::SECompartmentTransportGraph< COMPARTMENT_TRANSPORT_GRAPH_TEMPLATE > | |
| StateChange() | biogears::SECompartmentTransportGraph< COMPARTMENT_TRANSPORT_GRAPH_TEMPLATE > | virtual |
| Warning(const char *msg, const char *origin="") const | biogears::Loggable | protectedvirtual |
| Warning(const std::string &msg, const std::string &origin=empty) const | biogears::Loggable | protectedvirtual |
| Warning(std::ostream &msg, const std::string &origin=empty) const | biogears::Loggable | protectedvirtual |
| ~Loggable() | biogears::Loggable | virtual |
| ~SECompartmentGraph() | biogears::SECompartmentGraph< COMPARTMENT_GRAPH_TYPES > | virtual |
| ~SECompartmentTransportGraph() | biogears::SECompartmentTransportGraph< COMPARTMENT_TRANSPORT_GRAPH_TEMPLATE > | virtual |
