biogears::SECompartmentGraph< COMPARTMENT_GRAPH_TEMPLATE > Class Template Reference

#include <SECompartmentGraph.h>

Inheritance diagram for biogears::SECompartmentGraph< COMPARTMENT_GRAPH_TEMPLATE >:

Public Member Functions

virtual ~SECompartmentGraph ()
 
virtual void Clear ()
 
virtual std::string GetName () const
 
virtual const char * GetName_cStr () const
 
virtual void AddCompartment (CompartmentType &cmpt)
 
virtual CompartmentType * GetCompartment (const char *name)
 
virtual CompartmentType * GetCompartment (const std::string &name)
 
virtual const CompartmentType * GetCompartment (const char *name) const
 
virtual const CompartmentType * GetCompartment (const std::string &name) const
 
virtual const std::vector< CompartmentType * > & GetCompartments () const
 
virtual void RemoveCompartment (const CompartmentType &cmpt)
 
virtual void RemoveCompartment (const char *name)
 
virtual void RemoveCompartment (const std::string &name)
 
virtual CompartmentLinkType * GetLink (const char *name)
 
virtual void AddLink (CompartmentLinkType &link)
 
virtual CompartmentLinkType * GetLink (const std::string &name)
 
virtual const CompartmentLinkType * GetLink (const char *name) const
 
virtual const CompartmentLinkType * GetLink (const std::string &name) const
 
virtual const std::vector< CompartmentLinkType * > & GetLinks () const
 
virtual void RemoveLink (const CompartmentLinkType &link)
 
virtual void RemoveLink (const char *name)
 
virtual void RemoveLink (const std::string &name)
 
- Public Member Functions inherited from biogears::Loggable
 Loggable ()
 
 Loggable (Logger *log)
 
virtual ~Loggable ()
 
virtual LoggerGetLogger () const
 

Protected Member Functions

 SECompartmentGraph (const std::string &name, Logger *logger)
 
 SECompartmentGraph (const char *name, Logger *logger)
 
- Protected Member Functions inherited from biogears::Loggable
virtual void Debug (const char *msg, const char *origin="") const
 
virtual void Debug (const std::string &msg, const std::string &origin=empty) const
 
virtual void Debug (std::ostream &msg, const std::string &origin=empty) const
 
virtual void Info (const char *msg, const char *origin="") const
 
virtual void Info (const std::string &msg, const std::string &origin=empty) const
 
virtual void Info (std::ostream &msg, const std::string &origin=empty) const
 
virtual void Warning (const char *msg, const char *origin="") const
 
virtual void Warning (const std::string &msg, const std::string &origin=empty) const
 
virtual void Warning (std::ostream &msg, const std::string &origin=empty) const
 
virtual void Error (const char *msg, const char *origin="") const
 
virtual void Error (const std::string msg, const std::string origin=empty) const
 
virtual void Error (std::ostream &msg, const std::string &origin=empty) const
 
virtual void Fatal (const char *msg, const char *origin="") const
 
virtual void Fatal (const std::string &msg, const std::string &origin=empty) const
 
virtual void Fatal (std::ostream &msg, const std::string &origin=empty) const
 

Protected Attributes

std::string m_Name
 
std::vector< CompartmentType * > m_Compartments
 
std::vector< CompartmentLinkType * > m_CompartmentLinks
 
- Protected Attributes inherited from biogears::Loggable
Loggerm_Logger
 

Additional Inherited Members

- Static Public Attributes inherited from biogears::Loggable
static const std::string empty
 
static const char * empty_cStr
 

Constructor & Destructor Documentation

template<COMPARTMENT_GRAPH_TEMPLATE >
biogears::SECompartmentGraph< COMPARTMENT_GRAPH_TEMPLATE >::SECompartmentGraph ( const std::string &  name,
Logger logger 
)
protected
template<COMPARTMENT_GRAPH_TEMPLATE >
biogears::SECompartmentGraph< COMPARTMENT_GRAPH_TEMPLATE >::SECompartmentGraph ( const char *  name,
Logger logger 
)
protected
template<COMPARTMENT_GRAPH_TEMPLATE >
virtual biogears::SECompartmentGraph< COMPARTMENT_GRAPH_TEMPLATE >::~SECompartmentGraph ( )
virtual

Member Function Documentation

template<COMPARTMENT_GRAPH_TEMPLATE >
virtual void biogears::SECompartmentGraph< COMPARTMENT_GRAPH_TEMPLATE >::AddCompartment ( CompartmentType &  cmpt)
virtual
template<COMPARTMENT_GRAPH_TEMPLATE >
virtual void biogears::SECompartmentGraph< COMPARTMENT_GRAPH_TEMPLATE >::AddLink ( CompartmentLinkType &  link)
virtual
template<COMPARTMENT_GRAPH_TEMPLATE >
virtual CompartmentType* biogears::SECompartmentGraph< COMPARTMENT_GRAPH_TEMPLATE >::GetCompartment ( const char *  name)
virtual
template<COMPARTMENT_GRAPH_TEMPLATE >
virtual CompartmentType* biogears::SECompartmentGraph< COMPARTMENT_GRAPH_TEMPLATE >::GetCompartment ( const std::string &  name)
virtual
template<COMPARTMENT_GRAPH_TEMPLATE >
virtual const CompartmentType* biogears::SECompartmentGraph< COMPARTMENT_GRAPH_TEMPLATE >::GetCompartment ( const char *  name) const
virtual
template<COMPARTMENT_GRAPH_TEMPLATE >
virtual const CompartmentType* biogears::SECompartmentGraph< COMPARTMENT_GRAPH_TEMPLATE >::GetCompartment ( const std::string &  name) const
virtual
template<COMPARTMENT_GRAPH_TEMPLATE >
virtual const std::vector<CompartmentType*>& biogears::SECompartmentGraph< COMPARTMENT_GRAPH_TEMPLATE >::GetCompartments ( ) const
virtual
template<COMPARTMENT_GRAPH_TEMPLATE >
virtual CompartmentLinkType* biogears::SECompartmentGraph< COMPARTMENT_GRAPH_TEMPLATE >::GetLink ( const char *  name)
virtual
template<COMPARTMENT_GRAPH_TEMPLATE >
virtual CompartmentLinkType* biogears::SECompartmentGraph< COMPARTMENT_GRAPH_TEMPLATE >::GetLink ( const std::string &  name)
virtual
template<COMPARTMENT_GRAPH_TEMPLATE >
virtual const CompartmentLinkType* biogears::SECompartmentGraph< COMPARTMENT_GRAPH_TEMPLATE >::GetLink ( const char *  name) const
virtual
template<COMPARTMENT_GRAPH_TEMPLATE >
virtual const CompartmentLinkType* biogears::SECompartmentGraph< COMPARTMENT_GRAPH_TEMPLATE >::GetLink ( const std::string &  name) const
virtual
template<COMPARTMENT_GRAPH_TEMPLATE >
virtual const std::vector<CompartmentLinkType*>& biogears::SECompartmentGraph< COMPARTMENT_GRAPH_TEMPLATE >::GetLinks ( ) const
virtual
template<COMPARTMENT_GRAPH_TEMPLATE >
virtual void biogears::SECompartmentGraph< COMPARTMENT_GRAPH_TEMPLATE >::RemoveCompartment ( const CompartmentType &  cmpt)
virtual
template<COMPARTMENT_GRAPH_TEMPLATE >
virtual void biogears::SECompartmentGraph< COMPARTMENT_GRAPH_TEMPLATE >::RemoveCompartment ( const char *  name)
virtual
template<COMPARTMENT_GRAPH_TEMPLATE >
virtual void biogears::SECompartmentGraph< COMPARTMENT_GRAPH_TEMPLATE >::RemoveCompartment ( const std::string &  name)
virtual
template<COMPARTMENT_GRAPH_TEMPLATE >
virtual void biogears::SECompartmentGraph< COMPARTMENT_GRAPH_TEMPLATE >::RemoveLink ( const CompartmentLinkType &  link)
virtual
template<COMPARTMENT_GRAPH_TEMPLATE >
virtual void biogears::SECompartmentGraph< COMPARTMENT_GRAPH_TEMPLATE >::RemoveLink ( const char *  name)
virtual
template<COMPARTMENT_GRAPH_TEMPLATE >
virtual void biogears::SECompartmentGraph< COMPARTMENT_GRAPH_TEMPLATE >::RemoveLink ( const std::string &  name)
virtual

Member Data Documentation

template<COMPARTMENT_GRAPH_TEMPLATE >
std::vector<CompartmentLinkType*> biogears::SECompartmentGraph< COMPARTMENT_GRAPH_TEMPLATE >::m_CompartmentLinks
protected
template<COMPARTMENT_GRAPH_TEMPLATE >
std::vector<CompartmentType*> biogears::SECompartmentGraph< COMPARTMENT_GRAPH_TEMPLATE >::m_Compartments
protected
template<COMPARTMENT_GRAPH_TEMPLATE >
std::string biogears::SECompartmentGraph< COMPARTMENT_GRAPH_TEMPLATE >::m_Name
protected